rs229602674 SNP Detail

Summary

• ID
  rs229602674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:121851291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGCCGC GGGCTCTGGA
  CACGCACCGC ATTTTCCCTC CCAACCCCCC CCCCCCCCGG CCCAGTTCCT GCAATTTTTA
  GGGGTGAGGC GCCGCAACAG AGGAGTTGGT GCGGGTCCGA AGGCAACAAC TCCCGAGTGT
  TGGCTTGCGC CCTGGTCCCC CTCTCCCCTT CCCTGGGCCC GATCTCGTTG GTAGGCTGGG
  R
  TGCTGTCCTG TGTGACTGGA CTCTGGAGGG TGTGTGCGTG CGGGGGTGGG GAGTGGTGGG
  GGTGCTTGTC AGTTCGTATT TCACGAACTA AGAAAATGCT TAGTGTTAAA ACGGAGAGGC
  AGATGCCAAT AGACTCCATT CCATTGTGGC CGGTGTCCTT AACTTGGGAA ACGCCGCCGC
  CAGAGCTTAC CAAGGGCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366502179	MGP_WTSI_5_122163237	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229602674					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366502179	MGP_WTSI_5_122163237	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121851291 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700064N11Rik	RIKEN cDNA 1700064N11 gene			209 bp upstream
Atxn2	ataxin 2			Intron
				Noncoding-Transcript-Variant
Cpgi16531	CpG island 16531			within coordinates
Gm43571	predicted gene 43571			1881 bp upstream
Rr619651	regulatory region 619651			1774 bp distal
Rr619652	regulatory region 619652			1609 bp distal
Rr619653	regulatory region 619653			600 bp distal
Rr619654	regulatory region 619654			within coordinates
Rr619655	regulatory region 619655			239 bp proximal
Rr619656	regulatory region 619656			1135 bp proximal
Tssr48591	transcription start site region 48591			1369 bp downstream
Tssr48592	transcription start site region 48592			1313 bp downstream
Tssr48593	transcription start site region 48593			1178 bp downstream
Tssr48594	transcription start site region 48594			1157 bp downstream
Tssr48595	transcription start site region 48595			753 bp downstream
Tssr48596	transcription start site region 48596			947 bp upstream
Tssr48597	transcription start site region 48597			1899 bp upstream
Tssr53053	transcription start site region 53053			1749 bp upstream