rs229603146 SNP Detail

Summary

• ID
  rs229603146
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTTGTC CTTAAGTTAT
  CAACTTTCTT GCCTCCACCT CCTGAGTGGA TGGATTACAG GCTCCAGCCA CCATGTTTAG
  CTTTAGTTAA CATTTTTAAG CACTCAGGTT AGTATATTAC TGAATACACA TAGAAGGCTC
  TTTCTCAATT TTGAGGGAGA TTGCAAAGAA TCCCTGACAC TATGAAAGGC ATACTTTATA
  M
  AAAATATAAT GTGTAACACA TAATAGGACA AGATTGTACC ACAAGGTGAA AGCCTGTGTT
  GAGCCAAGAG CATCAAAACC AGAGGGAGGA CTGAGCAGGC GCAAAGGAGG AAAGGGGAGG
  AGTCTGACTC ACCCACATTA CCACACAGTT CAGACAGCAC AGACAGGAGA AACCCTTTTC
  ATAAATAAAA GAGAGGTGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366873376	MGP_WTSI_5_137624112	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229603146					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873376	MGP_WTSI_5_137624112	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177089 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	1018 bp downstream
Tssr49309	transcription start site region 49309	1537 bp upstream
Tssr49310	transcription start site region 49310	1897 bp upstream
Tssr49311	transcription start site region 49311	1911 bp upstream
Tssr53917	transcription start site region 53917	1535 bp upstream
Tssr53918	transcription start site region 53918	1475 bp upstream
Tssr53919	transcription start site region 53919	1397 bp downstream
Tssr53920	transcription start site region 53920	1413 bp downstream
Tssr53921	transcription start site region 53921	1568 bp downstream
Tssr53922	transcription start site region 53922	1609 bp downstream
Tssr53923	transcription start site region 53923	1650 bp downstream
Tssr53924	transcription start site region 53924	1664 bp downstream
Tssr53925	transcription start site region 53925	1702 bp downstream
Tssr53926	transcription start site region 53926	1733 bp downstream
Tssr53927	transcription start site region 53927	1882 bp downstream
Tssr53928	transcription start site region 53928	1900 bp downstream
Tssr53929	transcription start site region 53929	1937 bp downstream