rs229608600 SNP Detail

Summary

• ID
  rs229608600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126831809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTTCTGC TTTATTGACA
  AATCTAATAT AATACAAATA ACATTATGTA CTGCTAAAAC ATAACGAATT AATAAAAACC
  CCGTTAGCAC TCGCTTTAGT GGCAGGACGG AAGCCTCTGG GTACTCACCT CTATAAAGGA
  AAACCTGCCT ACAACATAAG ATGCCGGGGT TATGCTTCTA GGGCCTGGAT CCTTTGGAAC
  R
  TGACTCCAGC AAGATGGAGG CAGGGTTTAT TCTTCAGTCC CTCCCTGGGC TTGGCCTTTG
  CAAAGCCTTT CTTTGTTTTT CTACCTTTGT CTCCGCCTGT CGTCCTTTGT TCTGTCTCCC
  GCCCGTTTCT CTCCAGGCTC TCCGCCTCTT AGGGCCCCTG ATTCCATTAG GGTGACTTGA
  CGGTTCTTAT CTGTTTCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083621	MGP_WTSI_7_134376151	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229608600					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083621	MGP_WTSI_7_134376151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126831809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19733	CpG island 19733	98 bp proximal
Gm4532	predicted gene 4532	within coordinates
Rr166726	regulatory region 166726	within coordinates
Rr381454	regulatory region 381454	within coordinates
Septin1	septin 1	within coordinates
Tssr69182	transcription start site region 69182	247 bp upstream
Tssr69183	transcription start site region 69183	407 bp upstream
Tssr69184	transcription start site region 69184	590 bp upstream
Tssr74974	transcription start site region 74974	within coordinates
Tssr74975	transcription start site region 74975	111 bp downstream
Tssr74976	transcription start site region 74976	253 bp downstream
Tssr74977	transcription start site region 74977	487 bp downstream
Zfp553	zinc finger protein 553	424 bp upstream