rs229619106 SNP Detail

Summary

• ID
  rs229619106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:66684790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTGGTA GGAGGGCAGG
  TTCCTGTTTT CTCTAACCGT GCAATGCAGA CTTCTCTCTA CAAGGACGAT GGGGAAGAAA
  AGGGACATAT TAATTCCTTT ACAAAGCACT TGAGAATATA GCCAGCTTGA TGGCAAATGG
  CCAGAGCTTA TAGAAACACA CTCTTTTTCC CTCTCTTTTT CTAATTAAAA GGCAGATGAA
  R
  CTGACAATTT GCCCGTTTGT GTCCCCAGAG CTTACTGGTC CCAAGGAGGC TGAGGATAGC
  TCACTGCAGC TTTTCTTTGC CAGAGTTCCT TCATTTTTGC AGCTCTCTTG TGTCACTACA
  GAAGGAACCC AGAGGAGTCC CTGAAACTGT GCTCTGCTAC AGGCCAGTTT CAGTTTCCAG
  GGACCAAAAC CAGGGGATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325003331	CHEV_15_66644503	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229619106					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66684790 () rs orientation: forward

Symbol	Name	Function Class
Rr369944	regulatory region 369944	999 bp upstream
Rr503567	regulatory region 503567	1967 bp distal
Rr503568	regulatory region 503568	1175 bp distal
Rr503569	regulatory region 503569	359 bp distal
Rr503570	regulatory region 503570	within coordinates
Rr503571	regulatory region 503571	1143 bp proximal
Rr503572	regulatory region 503572	1189 bp proximal
Rr503573	regulatory region 503573	1997 bp proximal
Sla	src-like adaptor	within coordinates
Tg	thyroglobulin	within coordinates
Tssr131484	transcription start site region 131484	697 bp downstream
Tssr131485	transcription start site region 131485	563 bp downstream
Tssr134585	transcription start site region 134585	838 bp upstream
Tssr134586	transcription start site region 134586	806 bp upstream
Tssr134587	transcription start site region 134587	727 bp upstream
Tssr134588	transcription start site region 134588	292 bp upstream
Tssr134589	transcription start site region 134589	261 bp upstream
Tssr134590	transcription start site region 134590	231 bp upstream
Tssr134591	transcription start site region 134591	209 bp upstream
Tssr134592	transcription start site region 134592	256 bp downstream