rs229619561 SNP Detail

Summary

• ID
  rs229619561
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132286861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAGGACTG GTAGGCCACC
  TTCTCCTCCA TGCTGGCCAG CTCCTGCTTT AGGTTGGTCA TTTCATTCTG GTGAAGCTCA
  GTCAGGTCGT TCAGCTGTTC CTCCAGCCTC TCATACCTAG GGGAGAGGGG CAGGCAACAC
  CACTTCTTTG GCTACTCAGC TCTTCTCTCC CCAGGACCAA GGCGCCAGTC AGTAGCGACA
  W
  GCAGCCCACC CATGTGTCCA GTCCCGCTCT CATCTTAACC CCCGTGATAG CGCAGCATTT
  CTCTGTGACA GCCTTGTGCT AAGCATTGCC TGCATCACCT CAGAGGATTC TCACACAGCC
  TCATGAGACA GGACGAGGTC ATCCGTATTG ACAGGTGGAA GAATGAGACA GAGACTACTA
  AGGAACCTGT ACAGGACCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351471087	MGP_WTSI_1_134255700	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229619561					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351471087	MGP_WTSI_1_134255700	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132286861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi727	CpG island 727	1373 bp proximal
Tmcc2	transmembrane and coiled-coil domains 2	within coordinates
Tssr13633	transcription start site region 13633	1621 bp upstream
Tssr13634	transcription start site region 13634	1568 bp upstream
Tssr13635	transcription start site region 13635	1463 bp upstream
Tssr13636	transcription start site region 13636	867 bp upstream
Tssr13637	transcription start site region 13637	220 bp upstream
Tssr13638	transcription start site region 13638	1192 bp downstream
Tssr13639	transcription start site region 13639	1548 bp downstream
Tssr13640	transcription start site region 13640	1976 bp downstream