rs229619688 SNP Detail

Summary

• ID
  rs229619688
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57276741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agtatgccc tcaataaata GATAAGTTAG
  AGTGACTTCA ATAGCTCAAC ACTAAATTAC CAGAGCATCA GTGGCTAGGG TGGGGTGCAG
  GAGTTCTAGA TTAGATAGGG CAGCATAGGG ACACTACTTC TCTTTCTTTA AAAGGAGAAA
  W
  ATATTCGAAT ATTATCAGCT ATATCATCTA ATAGAATTCC ACATTACTCC TATACTTCGC
  TTTAAAAATA TCCCTGGCGT TCAGCCCTTT CTTTTAAGTT CTGCGATTGA ACATTCTGAG
  TACACCCTTT CTAGTCCTGA AGTCAAAATG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324050323	CHEV_12_58330942	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229619688					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57276741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	94 bp proximal
Mipol1	mirror-image polydactyly 1	472 bp upstream
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	457 bp upstream
Rr265473	regulatory region 265473	within coordinates
Rr403305	regulatory region 403305	422 bp upstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113519	transcription start site region 113519	451 bp upstream
Tssr113520	transcription start site region 113520	510 bp upstream
Tssr113521	transcription start site region 113521	559 bp upstream