rs229630024 SNP Detail

Summary

• ID
  rs229630024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12275610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGCTCT GCTGTTACTT
  CGATCTGCAC ATACAGTTTG CTGGTGTTTA AATAAACCAA TCCTGTGAAA CCGCACCAAT
  TCCTCCTACA GCCCCAGACC CTTTTCTATA AAAACCCCTA GCTTTTGAGC CTCGTGGCCA
  ACAACCGTTG TCTCCTGTGT GAGATACATG TCGGCCCAGA GCTCCATCAT TAAACTACCT
  Y
  GTGTGTTTGC ATCAAGACAG TCTCTCGTGA TTCTTTGGGT GCACGCCGAC TCGGGATACG
  AGTGGGGGTT TCCCCTCTAG GTTCTTTCAG GATATTGACC TCCTTTGCTG TTCATGGTGG
  CTCCAACATA ACACCTTTTC TTTCTTTTTT TTTTGTTTTT TGTTTTTTGA GACAGGGTTT
  CTCAGTGTAG CCCCGGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss387753869	MGP_WTSI_13_12352991	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T	T	C	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs229630024					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T	T	C	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387753869	MGP_WTSI_13_12352991	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12275610 () rs orientation: forward

Symbol	Name	Function Class
Gm47021	predicted gene, 47021	454 bp upstream
Rr270765	regulatory region 270765	791 bp proximal
Rr270766	regulatory region 270766	1791 bp proximal
Rr387989	regulatory region 387989	within coordinates
Tssr121434	transcription start site region 121434	520 bp upstream