rs229637662 SNP Detail

Summary

• ID
  rs229637662
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85433818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGCTTC GCTCAACTTC
  CACACAGAAC GCAGGGACAG CCGCCTCGCA GCCCCGAGCT CCCTGCTAGC GGCCATTCTC
  CTGTTCAGGG CCGCAGCCTC ACCAACTAGA TTCTCAATAA ATAAAGCCCA CAACCCACCC
  CCACGTGGTG CAATGTTGGA CCGACTTTCG GAAGATCCTG ACCTGTGCTT TGTGTTTTCA
  W
  ACCGGAGAGA GGCGCATGGC CTTGAGAACG GGCCTGGGAG GGGAGATGCA GGGAAGGAGG
  ACTAAGGCAC AGAAAGACAA GCCAGAGGGG CCCAGTCACC CTGCAGGGGG TCTGGCGTGC
  TCGCGTTCCC CTCCCTCCCA GGGGGCTTCT CAAGACCCTC TGGACAAGCC TCCGCCATCC
  CTTACTGGAG GAGGGGGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404569	MGP_WTSI_8_87231088	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229637662					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404569	MGP_WTSI_8_87231088	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85433818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20709	CpG island 20709	1239 bp distal
Cpgi20710	CpG island 20710	within coordinates
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	1783 bp proximal
Rr187001	regulatory region 187001	within coordinates
Rr187002	regulatory region 187002	1582 bp proximal
Tssr78440	transcription start site region 78440	1436 bp upstream
Tssr82119	transcription start site region 82119	1987 bp upstream
Tssr82120	transcription start site region 82120	1911 bp upstream
Tssr82121	transcription start site region 82121	1362 bp upstream
Tssr82122	transcription start site region 82122	1129 bp upstream
Tssr82123	transcription start site region 82123	980 bp upstream
Tssr82124	transcription start site region 82124	935 bp upstream
Tssr82125	transcription start site region 82125	861 bp upstream
Tssr82126	transcription start site region 82126	673 bp upstream
Tssr82127	transcription start site region 82127	1316 bp downstream