rs229644315 SNP Detail

Summary

• ID
  rs229644315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:32521304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGCTGG CCGCTTACAT
  TGCTATACGC CATACTAACA TGGCACACAA CATCCTAACT CAATTTCTTG ATAATACTAA
  GTGAAAGTTT ACTTTAGAGA GTATGTGAAT GCAGTTAACA TCTGGGCTTA AGAACCAGTC
  TGAAAACTTG GGAAAAGAGA ACCATCTGAA AGATCTCTAG CATTAGAAAA GAGAGGTGAC
  R
  TGGGGGGGGG TGCACAGTTC TATGGTAGAG CACCCCTGAG GAGTCCCTGA CTTGACGTTT
  TTATCCTCAA CCCTGGACCC TTTTCCTACC TCTTCTATCT TACTAGTTGG TAAACGTTTA
  TTTATCGAAA GTACCTTAAA CAAGATGCAA TGATAACTGA AAGAATGATC AGTAGCTAGT
  AACTGAAATA GTCTAATGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388186306	MGP_WTSI_13_32429190	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229644315					SNP	A	A	A	G	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388186306	MGP_WTSI_13_32429190	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32521304 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	1498 bp upstream
Cpgi5422	CpG island 5422	627 bp proximal
Gmds	GDP-mannose 4, 6-dehydratase	Intron
Rr369665	regulatory region 369665	1490 bp upstream
Rr476844	regulatory region 476844	1406 bp proximal
Rr476845	regulatory region 476845	1409 bp proximal
Tssr121995	transcription start site region 121995	1179 bp downstream
Tssr121996	transcription start site region 121996	1233 bp downstream
Tssr121997	transcription start site region 121997	1244 bp downstream