rs229646698 SNP Detail

Summary

• ID
  rs229646698
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45236833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCATCC TCATGGTCTT
  TGAAGATCCG GATGCTTCCT AATGTCCTGT GAAGCCTGGG TCAAAGTTCA GGGTCAAAGT
  TCAGTGGCTG CTGTCCTCTG GCATCTGGAA TGTTCTTCCT TTCTGACATC CTCCTGGGAC
  TCGCAAATGT TCTTCAGGTG GCACTTTTCA TTCAGATTTT GGGGTTCTAG GTCTTTCCTT
  S
  TGCACAGGTC TGGGTGGCGT TATAGTACCT AGCTTTCACC CCCAGTTCTG ATAACAAGAG
  TGCTGACTCT GTCAAGGCCA GTGCTGAACG AGTGTCCTCC GACTCAAGGT CAACTACCAG
  TTTTCTGGTG TTATCTATTC TGGCTTCTAC TGACTTCCCA CCGTGCTGGC TGATCGCCAG
  GTCTCTTCTG TTCTCACGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322943018	CHEV_9_45133618	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229646698					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45236833 () rs orientation: forward

Symbol	Name	Function Class
Rr203899	regulatory region 203899	654 bp distal
Rr203900	regulatory region 203900	60 bp proximal
Rr203901	regulatory region 203901	888 bp proximal
Tmprss13	transmembrane protease, serine 13	within coordinates