rs229650279 SNP Detail

Summary

• ID
  rs229650279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13427271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGATTATA CCTTTGAATC
  TCTTCCCCCT CCCTTTTGTT GTTGTTTTGT TTTCTGTTTG TATGTCTTTT GTTTTTTGAG
  ACAGGGTCTC AATATGAAGC TCTGGGTGTT CTGGACCTTA CCTCCAACTC AGAGAGCTGC
  CTGTCTCTGC TTCCGAGTGC TGGGATTAAG AGTGTGTGCC ACCACACCCA GTTTTTTCCT
  Y
  CCTCTTCATC TCCAAATATA AAACTCTCAA TATCGTTTCA AAAAAAACCT ATTACTATAT
  GCATATACTC TTTAATTTCT CCTATGATTA TTTCTGATCT GCCATTAAGT ATTTCATAAA
  CTGTAAGGGT TAGGCTTTTC CCTCTGAAAT TGCTAGAGAC AATTTTCTTC CCTTAGGTAG
  AGCAAAAATT TTTCTTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379486938	MGP_WTSI_10_13271333	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229650279					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379486938	MGP_WTSI_10_13271333	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13427271 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	1380 bp upstream
Cpgi1315	CpG island 1315	1324 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	1412 bp upstream
Rr427802	regulatory region 427802	1040 bp proximal
Rr427803	regulatory region 427803	1301 bp proximal
Rr427804	regulatory region 427804	1378 bp proximal
Rr427805	regulatory region 427805	1583 bp proximal
Tssr92399	transcription start site region 92399	1660 bp upstream
Tssr92400	transcription start site region 92400	1718 bp upstream
Tssr96771	transcription start site region 96771	1328 bp downstream
Tssr96772	transcription start site region 96772	1472 bp downstream
Tssr96773	transcription start site region 96773	1536 bp downstream
Tssr96774	transcription start site region 96774	1584 bp downstream
Tssr96775	transcription start site region 96775	1613 bp downstream
Tssr96776	transcription start site region 96776	1628 bp downstream