rs229650559 SNP Detail

Summary

• ID
  rs229650559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143816327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGCCTCCC CTTTATAACC CTGCTTCCTT
  CATCTCACTT CCATGTACTC AGCTGCCTCC AACCTGAATT CAGTCACACT CGAATGTTTT
  CTTTGTTGAC ATTAGTGACT TCCACCATGT CTCCTCCCCC CACTCCCCAA TTTGATTACC
  R
  CAGTAGCTGG ATAGTAATAC TTCAATACTC CCTTGACTCA CTTCCACATT ACGCTCTTCT
  ACACTTTCCA ATAGAAACCA GCCAAGGTCA CCAGTGCTTT ACATAATGTT TTCTGATGGC
  CCTGGTGTCC CTCTTATGAC TTTTCCTCAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320011048	CHEV_1_145787719	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229650559					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143816327 () rs orientation: forward

Symbol	Name	Function Class
Gm41964	predicted gene, 41964	within coordinates
Rr419966	regulatory region 419966	1832 bp distal
Rr419967	regulatory region 419967	1644 bp distal
Rr419968	regulatory region 419968	894 bp proximal