rs229652294 SNP Detail

Summary

• ID
  rs229652294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55205933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTAGGTC TTGCATGCAG
  TATTCTCCAA GGGACCTGAT TCAACCTTGC ATTCCCGTTT GCAGCCACCT ATGCCAAATG
  GTTGCTCTTT GGGGATAAAG GCCACCTGTC TGCAGCTGTG TCCCTGGAGG TCACTTGAGG
  CTCCTGTGTG CAAGCTCCAG GGTTAGCCCA TGGCCTAATA TGTCACTGCC TGGTTCTCAA
  R
  CTCTTGAGGG CATGATAAGG TACTGAGAAC ATTGGGTCAG CTTGGGTCAG GTCCAAGAGA
  CAAAGGCCAG GCTCTGTCCT CAGGGAACCT GGAATGCCAC TCAGGCCAAA CTTGGTATGG
  GTAGTGGGGG CTCATGGGGG ATGGTGGTCA CAGAGTTCCC ACTGCCTCCT ATGGAAGATG
  CAACAAGGAA GGAGTTAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss391147601	MGP_WTSI_14_55587313	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs229652294					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391147601	MGP_WTSI_14_55587313	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55205933 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	282 bp upstream
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	1549 bp upstream
Rr407057	regulatory region 407057	693 bp distal
Rr492378	regulatory region 492378	1882 bp distal
Rr492379	regulatory region 492379	1345 bp distal
Rr492380	regulatory region 492380	within coordinates
Rr492381	regulatory region 492381	1185 bp proximal
Tssr4423	transcription start site region 4423	1977 bp upstream
Tssr4424	transcription start site region 4424	1939 bp upstream
Tssr4425	transcription start site region 4425	1826 bp upstream
Tssr125718	transcription start site region 125718	196 bp upstream
Tssr125719	transcription start site region 125719	275 bp upstream
Tssr125720	transcription start site region 125720	305 bp upstream
Tssr125721	transcription start site region 125721	325 bp upstream
Tssr125722	transcription start site region 125722	750 bp upstream
Tssr125723	transcription start site region 125723	819 bp upstream
Tssr125724	transcription start site region 125724	831 bp upstream
Tssr125725	transcription start site region 125725	1691 bp upstream
Tssr125726	transcription start site region 125726	1716 bp upstream
Tssr125727	transcription start site region 125727	1749 bp upstream
Tssr128742	transcription start site region 128742	1891 bp upstream
Tssr128743	transcription start site region 128743	1868 bp upstream
Tssr128744	transcription start site region 128744	1539 bp upstream
Tssr128745	transcription start site region 128745	1254 bp upstream
Tssr128746	transcription start site region 128746	501 bp upstream
Tssr128747	transcription start site region 128747	477 bp upstream
Tssr128748	transcription start site region 128748	433 bp upstream
Tssr128749	transcription start site region 128749	402 bp upstream
Tssr128750	transcription start site region 128750	380 bp upstream
Tssr128751	transcription start site region 128751	374 bp upstream
Tssr128752	transcription start site region 128752	315 bp upstream
Tssr128753	transcription start site region 128753	116 bp upstream
Tssr128754	transcription start site region 128754	46 bp upstream