rs229652408 SNP Detail

Summary

• ID
  rs229652408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164751410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCAGCAT GCTGGGGTCT
  GGGAGAACAC TGGAATGCAC CAGAGCTGGG GGGCCACCAG GCATCTCTGC TACTGGTCCC
  CGGGACACAG AAGATGAATC AGGGAGGCAG CCATGAGGCA AAGGGTCTGT TGAGATGCTC
  TCAGATACCT CCTCCTAGGT GTAGAAAGCA GAGGGCAGTT CAGGAGCCAG GCGTGAGGCA
  R
  GACAGAGCAG CCTGTAGATA CCCCAGAAAC AACAAATAAA GCCACCCACC CACATTTCAG
  CCTTACAGAG GCCCAGGAGG GTTCTCCTGT GAGGGCCCAC AGATATAGTC AGGAACTACC
  CCAGGGGGGA AAGCAGCAGC TCTCTAGACC ACAGGCCACA GCCAGGAGGC ACAACTGTCA
  CTGGGCTTTT GCATCAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356443456	MGP_WTSI_2_164734990	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229652408					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356443456	MGP_WTSI_2_164734990	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164751410 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12677	CpG island 12677	1004 bp proximal
Rr367365	regulatory region 367365	1022 bp upstream
Rr569758	regulatory region 569758	155 bp proximal
Rr569759	regulatory region 569759	263 bp proximal
Rr569760	regulatory region 569760	605 bp proximal
Rr569761	regulatory region 569761	1404 bp proximal
Rr569762	regulatory region 569762	1838 bp proximal
Rr569763	regulatory region 569763	1905 bp proximal
Tssr21686	transcription start site region 21686	1937 bp upstream
Tssr27593	transcription start site region 27593	1685 bp downstream
Tssr27594	transcription start site region 27594	1728 bp downstream
Tssr27595	transcription start site region 27595	1768 bp downstream
Zfp335	zinc finger protein 335	Intron
Zfp335os	zinc finger protein 335, opposite strand	1943 bp upstream