rs229653643 SNP Detail

Summary

• ID
  rs229653643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99241913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTAAAT TAAGAATAAA
  TCTCCAAAAA CTTATTTATC AGAGTAAGGT TTTACAACAA TGGGAATGCT GCCGGAGGTC
  AGAATACCTG AATCTCCTTC CTCTGCTCTT GGTCATCTTC TTCTCAGGCT ACCCTGGGAT
  ATCAACCACA AAGCCCCTCC TTCCAAGTGC CTTTGAAGAG TCCGCTGCAT TCAAATCTTA
  Y
  TAAAGTTTCT GAGAAGTCCT ACAGACAAAG GCTGGTAAAC AGAATTTAAC CCTATGTTGC
  TCTAATGATT CCCTATGGAA CCCATTCCTC AAGACATTTC TCTCTTGATT GGCGCAGCTC
  AACAGAAGCT AACAGGCTTC TGAGGCTATG TGTCAGGGAC CCAGAGCTGT CTCCAGCAAG
  GCGAGGCAGA AGGAACACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323135621	CHEV_9_99260279	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229653643					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99241913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	1155 bp distal
Esyt3	extended synaptotagmin-like protein 3	1303 bp upstream
Rr198328	regulatory region 198328	888 bp proximal
Rr206935	regulatory region 206935	1112 bp distal
Tssr91051	transcription start site region 91051	1308 bp upstream