rs229654466 SNP Detail

Summary

• ID
  rs229654466
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131645279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCTGGAG AGATGGCTCA
  GTGGTTAAGA GCACTGACTG CTCTTCCCAA GGTCCTGAGT TCAAATCCCA GCAACCACAT
  GGTGGCTCAC AACCATCCGT AATGAGATCT GACGCCCTCT TCTGGGGTGT CTGAAGACAG
  CTACAGTGTA CTCATATATA ATAAATAAAT AAATCTTTAA AAAAAATACT GTCTTCTTAT
  K
  TTGTTCACGA GCAGGCATAG ATGTGAGCAG GGCAAGGCTG GGTACACCTG CCACAGAAGC
  TGGTTCCACA CCGATAAGGG TGAAAGCCCA CCTCAGAGAC TGTACAAAGA ACTGGGTAGA
  CCAGAGAGAG GAGCCTAGTC AACTTCCATC CAAGTACGGC TTGGGGAGAC GACTCTATTG
  TCACAAGGGC CTTGTTCCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329081	CHEV_4_131473883	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229654466					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131645279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14946	CpG island 14946	1205 bp distal
Cpgi14947	CpG island 14947	1743 bp proximal
Gm12992	predicted gene 12992	within coordinates
Gm68339	predicted gene, 68339	1577 bp downstream
Rr85750	regulatory region 85750	679 bp distal
Rr85751	regulatory region 85751	79 bp distal
Rr100127	regulatory region 100127	1678 bp distal
Rr100128	regulatory region 100128	521 bp proximal