rs229656560 SNP Detail

Summary

• ID
  rs229656560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52466152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atatcaaat tgatcagcct taaaatgtac
  atacagatat cattatacaa attgagcaaa gtatttatac ttataaatac atctcccaaa
  tgcatggcac aacaattagt gaaaaaagag gccatgaaat tttgcaagac agtaaggaag
  Y
  gggtctatgc tagcattttg agggaggaaa gggaagggag aaatgatata attgtattat
  atctcaaaaa TATATATAAT TAAAGAAGAA CAATAAAAGA ACACCTTTGA AAAAAATCCC
  TAAAAGGAAA ATGTTTATCC TTTAACAACC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319720160	CHEV_1_52483837	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229656560					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52466152 () rs orientation: forward

Symbol	Name	Function Class
Gm69377	predicted gene, 69377	426 bp upstream