rs229660257 SNP Detail

Summary

• ID
  rs229660257
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121981618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTACGTA ACACAGTTCC
  ACCCGCCTCA CATTGAAATC CAAATGCTGA AGAACGGGAA AAAAATTCCT AAAGTAGAGA
  TGTCAGATAT GTCCTTCAGC AAGGACTGGT CTTTCTATAT CCTGGCTCAC ACTGAATTCA
  CCCCCACTGA GACTGATACA TACGCCTGCA GAGTTAAGCA TGCCAGTATG GCCGAGCCCA
  W
  GACCGTCTAC TGGGGTAAGC CTCAAGTTCT TCCTTACTTT CTGGACGCTC CATCTGTGTG
  GACTTAAAAC TGCTTTGCTA TTTTAAAAAC CTGCATACTG AGATTGTTAG AGAATACCCC
  CAAAAGACTG ATCTGTGGTG CCAGCAGAGA CTTACACAGC AGGCCAGGAA CCAGCAGTTC
  CCTACCCACT GTCCCAGACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355480733	MGP_WTSI_2_121976873	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229660257					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355480733	MGP_WTSI_2_121976873	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121981618 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Rr563913	regulatory region 563913	1934 bp distal
Tssr19807	transcription start site region 19807	1953 bp downstream
Tssr19808	transcription start site region 19808	1879 bp downstream
Tssr19809	transcription start site region 19809	1563 bp downstream
Tssr19810	transcription start site region 19810	528 bp downstream
Tssr19811	transcription start site region 19811	251 bp downstream
Tssr19812	transcription start site region 19812	207 bp downstream
Tssr19813	transcription start site region 19813	189 bp downstream
Tssr19814	transcription start site region 19814	171 bp downstream
Tssr19815	transcription start site region 19815	157 bp downstream
Tssr19816	transcription start site region 19816	136 bp downstream
Tssr19817	transcription start site region 19817	111 bp downstream
Tssr19818	transcription start site region 19818	52 bp downstream
Tssr19819	transcription start site region 19819	33 bp downstream
Tssr19820	transcription start site region 19820	1471 bp upstream
Tssr19821	transcription start site region 19821	1502 bp upstream
Tssr19822	transcription start site region 19822	1614 bp upstream
Tssr19823	transcription start site region 19823	1647 bp upstream
Tssr19824	transcription start site region 19824	1702 bp upstream
Tssr19825	transcription start site region 19825	1725 bp upstream
Tssr19826	transcription start site region 19826	1765 bp upstream
Tssr19827	transcription start site region 19827	1794 bp upstream
Tssr19828	transcription start site region 19828	1831 bp upstream
Tssr19829	transcription start site region 19829	1875 bp upstream
Tssr25955	transcription start site region 25955	215 bp upstream
Tssr25956	transcription start site region 25956	139 bp upstream
Tssr25957	transcription start site region 25957	7 bp upstream
Tssr25958	transcription start site region 25958	1725 bp downstream
Tssr25959	transcription start site region 25959	1925 bp downstream