rs229660993 SNP Detail

Summary

• ID
  rs229660993
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37873766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACAAGGC CAGGTCTCTA
  ATTGAACCCT GATTTACCTA GTGTAGACAG CCATCTCCTG TCTTTGCCTC TGGAGGGCTG
  TGAGGACAGG CAAACTGCTC TCACCCACAT AGCTGGGGAC CCAAACTCTC CTCCCTGTAT
  ACTCTTTATT TGAGAAGCCC CATAACTTGT GCCTTATTTA AAAAAACAAA AACAAAAAAA
  C
  AAAAAAAAAA AAAACAAAAA GCAGGAGGAT TTGCATGCAA TTACAGTAGG ATGGGACATG
  GATGGGAAAC AGGAGGAGGA AGGGCTTCAC CACCAAAGTG TTCTCCCTTT GCTCCTCTGG
  CTTGTTTACA TTTTTAAAAA TCAACCTGTG TTACTCACAA CCTGTGGTAC TTGTGTTTCC
  TCATTGTTTC TCTCTCTCTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
ss388299968	MGP_WTSI_13_37781659	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
rs229660993					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388299968	MGP_WTSI_13_37781659	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37873766 () rs orientation: forward

Symbol	Name	Function Class
Rr271585	regulatory region 271585	766 bp distal
Rr279067	regulatory region 279067	within coordinates
Rr283303	regulatory region 283303	436 bp proximal