rs229663569 SNP Detail

Summary

• ID
  rs229663569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:45006639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAATTGT GTTTATTTTG
  TACCATGTGG AGGGGAAAAA AAAAAAGGAT TCTTTTCTGG TTTAGAAATG GAGCTGGTCT
  TTCATCTAAA GGAATTGTTT CAATCCTGTA GTGCTATGCA GGACGTGGCT AACCTAACTT
  CGTTTAGAGT TGCGAGCAAA GGCTGATGAT ACCCGGGACC CCTGGATTAG GTGTGTGAGG
  R
  CACGGCGGGG TCTAGGCAAA GCCAAACGGT TTTCTCACGT GCAAACTCGC AATCCAATCC
  ATTCGGAGTT GAGCCTAGGA TAGGAGGGGA AAGCCTATTT AAAAAAAAAA AATCGGGAGC
  ATCTCAGAGA AGCCCTTTTC AAACAAAACT AAAACAGGAC CGGAGAGCCC GCGACCGTCC
  CTCACCTCCC CGCTGCGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353808085	MGP_WTSI_2_44972147	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229663569					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353808085	MGP_WTSI_2_44972147	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45006639 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11634	CpG island 11634			47 bp proximal
Gm28643	predicted gene 28643			1578 bp upstream
Rr373117	regulatory region 373117			within coordinates
Rr556443	regulatory region 556443			1619 bp distal
Rr556444	regulatory region 556444			within coordinates
Rr556445	regulatory region 556445			758 bp proximal
Tssr17636	transcription start site region 17636			604 bp upstream
Tssr23988	transcription start site region 23988			337 bp downstream
Tssr23989	transcription start site region 23989			674 bp downstream
Tssr23990	transcription start site region 23990			722 bp downstream
Tssr23991	transcription start site region 23991			773 bp downstream
Tssr23992	transcription start site region 23992			799 bp downstream
Tssr23993	transcription start site region 23993			896 bp downstream
Zeb2	zinc finger E-box binding homeobox 2			Intron
				Noncoding-Transcript-Variant