rs229663605 SNP Detail

Summary

• ID
  rs229663605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44056278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGTTCAG CAGCCAGATC
  AGTGGGAGAT CTGAGGCTGG CACTTAGCCT GGGTTCTGGA CAACACAGGA GTGGTCAGCC
  ACATTTTTCT CAAGCAGGGA AGAGGCTGCA AGATCTGCAA GCAGGTGTTG GTCAGCCCCT
  GGCCCCTCCC CATAGTGCTC TTCAGCAGGC ACAAAACAAT GTGCAGGGCT CTCCCTGTCC
  Y
  TAGTTCTCCA TCTCAACTCT TGTGCTACTT ACTGGAACCA AGAAATACTG GTCCTTTCTC
  TTGCAGCCAA GCCAGATTTC CTGGGGCACT GTGAAGGCAC ATGGCACTAC TATCCCTCTG
  CTGCTTCACT CAGGAGCTGA GACATCAATT GAAAACCTGA TGACCTGCTC TTGCCCTTCT
  TCCTATGTGC CTCAATGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322940210	CHEV_9_43953064	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229663605					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44056278 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	within coordinates
Rr677565	regulatory region 677565	675 bp distal
Rr677566	regulatory region 677566	340 bp distal
Rr677567	regulatory region 677567	419 bp distal
Tssr89112	transcription start site region 89112	433 bp upstream
Tssr89113	transcription start site region 89113	248 bp upstream