rs229664224 SNP Detail

Summary

• ID
  rs229664224
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156078904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTCTCAA AACAAAACAA
  AAAAGCAAAA GAAACAAAAT ATATAGTTTG ATTTCATCAG AATTATAATG TAAGGATGGC
  AAAGAAGTAC AGATATTCCC CCAGCCACCC TGTGTATTCC TGAAACCTAG GTGGAACTAA
  GTCCTGAGTA GACTGTTATA GGTACAGCAA ATTTTAATTT AGAAATTAGG CCCAGGTAGA
  C
  ATTAACAAAT GATCATAAAA CAGTTGTGAC TTTGACAAAT AGAATGCCAT CTGACTTCGA
  TTGATGGCAA ATCAAGGGGT ATCATTGTCA CCTCCACTAC AGGTGTCACT AGCATTCCTT
  TTTACTACTG GTTGGAAACT GATATGTGTA GAAGCTATGA CAAGATGAAA CTCCTGAGTT
  TCATGCCTGT TTTCTTCTCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444401	CHEV_4_155368556	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229664224					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156078904 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	1798 bp upstream
Cpgi15496	CpG island 15496	610 bp distal
Rr100725	regulatory region 100725	within coordinates
Rr377473	regulatory region 377473	74 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr1404	transcription start site region 1404	1501 bp downstream
Tssr40749	transcription start site region 40749	1260 bp downstream
Tssr40750	transcription start site region 40750	1151 bp downstream
Tssr40751	transcription start site region 40751	1131 bp downstream
Tssr40752	transcription start site region 40752	992 bp downstream
Tssr40753	transcription start site region 40753	1892 bp upstream
Tssr44988	transcription start site region 44988	1773 bp upstream