rs229664959 SNP Detail

Summary

• ID
  rs229664959
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77574886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGTGAG TTGGATGTTA
  GTCTATGCTA TAAGAGACTC TGACAAAACA AAACAAAACA AAACAAAAAA CCAAAACAAT
  AAATGCTAAG CAAACAGAAA TGAATAATTA AAACAGGGCT GAAGAGATGA CTCAGTGGCT
  GAGACTTCTT GTTGCTCTTG CAGAAGACTC AAGTTTAGTT CCCAGCCCCA CACAGTGATC
  M
  TAACCATTCT TTTTGTTTGT TTGTTTGTCT TTGCTTTTTG AGGCAGGGTT TCTCTGTGTA
  GCCCTGGCTG TCCTGGAACT CACTCTGTAG ACCAGGCTGG CCTCCAACTC AGAAATCAGC
  CTGCCTCTGC CTCCCGAGTA CTGGGATCAC AACCATTCTT AATGCCACAT GTAAGGGACC
  TGACAAAGCT CTTCTGACTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755516	CHEV_11_77497562	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229664959					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77574886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3317	CpG island 3317	1712 bp proximal
D11Bhm149	DNA segment, Chr 11, Boehm 149	817 bp distal
D11Bhm150	DNA segment, Chr 11, Boehm 150	498 bp distal
Gm72230	predicted gene, 72230	within coordinates
Nufip2	nuclear FMR1 interacting protein 2	1680 bp upstream
Rr402754	regulatory region 402754	1573 bp upstream
Rr451737	regulatory region 451737	1605 bp proximal
Tssr103164	transcription start site region 103164	1693 bp upstream
Tssr109342	transcription start site region 109342	1918 bp downstream