rs229670121 SNP Detail

Summary

• ID
  rs229670121
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121053242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccaccacgc ccggctCAAT AACTTCTTAA
  TATGAACCCA AAGGTCAAAA AAATTAACAG AAGTCTTAAG CATAGATTTT TAAATTTAAA
  AAGAACTGCT TCGTGGCAAT ACCAATGACT TCCACCTTTT CCCATAACCC GCCATCCTTT
  M
  CTTTTTCCTC ATCGTCCCTC CCTATATTCT CCCCAACAGT TCAGAAGGCA CAAAGAGGGT
  CATTTATAGT CAGTAGGCAC TTTATGtttt ttaaaaaatt taaaattCTC TTCAAATTTT
  TAAAGATTTG GCAATAATAA GCTTGAATCC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320482325	CHEV_2_121048497	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229670121					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121053242 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373765	regulatory region 373765			816 bp downstream
Rr563789	regulatory region 563789			203 bp proximal
Rr563790	regulatory region 563790			458 bp proximal
Trp53bp1	transformation related protein 53 binding protein 1			Intron
				Noncoding-Transcript-Variant