rs229671298 SNP Detail

Summary

• ID
  rs229671298
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89083578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAATGGGAG GAGAGGCCCT TGATCCTGTG AAGGCTCTAT
  GCCCCAGTAG AGGGGAATGC CAGGGCCAGG AAGCAGAGTG GGTTGTTTGG TGAGCGGGGG
  A
  TGGAGGGGGA GGAAGAAGGG ATAGGGGGTT TGCAGAGGGG AAACCAAGAA AGGAGATAAC
  ATTTGAAACA TAAATAAAGA ATATATCTTA AGAAAAAAG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325272547	CHEV_16_89286935	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229671298					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89083578 () rs orientation: forward

Symbol	Name	Function Class
Gm33084	predicted gene, 33084	1696 bp upstream
Gm52246	predicted gene, 52246	1823 bp downstream
Tssr139267	transcription start site region 139267	1637 bp upstream