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rs229672386 SNP Detail
Summary
  • ID
    rs229672386
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr7:79492470 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAGTGTGTG GTTACGACTG
CAGGTGGCCT GGATGGAGAG GGGGGAGTGG GGGTGGGAAA TCAGCTAGAG CGGGGGCTGA
AGGGCAGGCT GCAGACTTGG CACCTAGAGG CAGGGGGGAA GGCAGTGACG GTAATCTACC
TGCAAGGAGA AATGGAGAGA ACAGACTCAT GAGGACAGAG GTTAGACTCA GGGAAAGATT
S
CCCAGGCTCG AGAGGTAAGG CAGGCAGAGC AGAATGAAGC CAGTTCCCAG CAGGCCATCA
AAAGCATACC AGCTCCACCT CTGGGTTCCT CAACAGATGC CAGGGGCCCC TTGGGACAGT
CTTCAGATTC GCCCCCTTTT CCTCCTGACC AACTTCTTTC CCCTCAGCTC TCCAAAGAAG
GCGAAATGAA CCCTTCTCTC                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss372032964 MGP_WTSI_7_86987608 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229672386 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss372032964 MGP_WTSI_7_86987608 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:79492470 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Anpep alanyl aminopeptidase, membrane within coordinates
Gm71751 predicted gene, 71751 within coordinates
Rr649722 regulatory region 649722 289 bp distal
Rr649723 regulatory region 649723 within coordinates
Rr649724 regulatory region 649724 1330 bp proximal
Tssr67371 transcription start site region 67371 883 bp downstream
Tssr67372 transcription start site region 67372 632 bp downstream
Tssr67373 transcription start site region 67373 213 bp downstream
Tssr67374 transcription start site region 67374 173 bp downstream
Tssr67375 transcription start site region 67375 137 bp downstream
Tssr73161 transcription start site region 73161 1805 bp upstream
Tssr73162 transcription start site region 73162 1747 bp upstream
Tssr73163 transcription start site region 73163 1726 bp upstream
Tssr73164 transcription start site region 73164 1563 bp upstream
Tssr73165 transcription start site region 73165 1017 bp upstream
Tssr73166 transcription start site region 73166 985 bp upstream
Tssr73167 transcription start site region 73167 783 bp upstream
Tssr73168 transcription start site region 73168 762 bp upstream
Tssr73169 transcription start site region 73169 725 bp upstream
Tssr73170 transcription start site region 73170 706 bp upstream
Tssr73171 transcription start site region 73171 621 bp upstream
Tssr73172 transcription start site region 73172 609 bp upstream
Tssr73173 transcription start site region 73173 591 bp upstream
Tssr73174 transcription start site region 73174 505 bp upstream
Tssr73175 transcription start site region 73175 477 bp upstream
Tssr73176 transcription start site region 73176 420 bp upstream
Tssr73177 transcription start site region 73177 394 bp upstream
Tssr73178 transcription start site region 73178 368 bp upstream
Tssr73179 transcription start site region 73179 303 bp upstream
Tssr73180 transcription start site region 73180 213 bp upstream
Tssr73181 transcription start site region 73181 147 bp upstream
Tssr73182 transcription start site region 73182 135 bp upstream
Tssr73183 transcription start site region 73183 96 bp upstream
Tssr73184 transcription start site region 73184 553 bp downstream
Tssr73185 transcription start site region 73185 1802 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory