rs229678377 SNP Detail

Summary

• ID
  rs229678377
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147215842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAAGCCCC CCAGCCCGGG
  AGGCAAGGCC ACGGATGCAC TCGGTAGCTT ACACGGACTG CCCATCCCAG CCTCGACCTC
  CTAGGGGCTG TCCTCTCACA GAGCCACAGC CCGGTTCAGA GGAGCCGGCC GGGAGTGCAG
  CTCAGCTCAT TCGACCTCTG CACCTCTGCG CTAGCAGCAT CCTGGAGTTG GGGCCCCGGC
  W
  TTGCTTTGGT CTCAACAGTT CCGCCGGTGC TTCCTTCAGG AAACCCTGGA ATTTTTTAGG
  TCTTTCCGAG TCTTGGTTTT AGATGGCTGC GTTCTCCTAA CCTTCCTAGT TCGGAGAGAG
  ACTCCTGCAT CCACCTCAAT TTATTTTTGT TTTGTCTTTT CCCATCCATA TCCTTCCTCT
  CTCTTCTTCT TCCTCTTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320549999	CHEV_2_147199658	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229678377					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147215842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	25 bp distal
Pax1	paired box 1	within coordinates
Tssr20631	transcription start site region 20631	59 bp downstream
Tssr20632	transcription start site region 20632	3 bp downstream
Tssr20633	transcription start site region 20633	25 bp upstream
Tssr20634	transcription start site region 20634	113 bp upstream
Tssr20635	transcription start site region 20635	1606 bp upstream