rs229678377 SNP Detail

Summary

• ID
  rs229678377
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:147215842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAAGCCCC CCAGCCCGGG
  AGGCAAGGCC ACGGATGCAC TCGGTAGCTT ACACGGACTG CCCATCCCAG CCTCGACCTC
  CTAGGGGCTG TCCTCTCACA GAGCCACAGC CCGGTTCAGA GGAGCCGGCC GGGAGTGCAG
  CTCAGCTCAT TCGACCTCTG CACCTCTGCG CTAGCAGCAT CCTGGAGTTG GGGCCCCGGC
  W
  TTGCTTTGGT CTCAACAGTT CCGCCGGTGC TTCCTTCAGG AAACCCTGGA ATTTTTTAGG
  TCTTTCCGAG TCTTGGTTTT AGATGGCTGC GTTCTCCTAA CCTTCCTAGT TCGGAGAGAG
  ACTCCTGCAT CCACCTCAAT TTATTTTTGT TTTGTCTTTT CCCATCCATA TCCTTCCTCT
  CTCTTCTTCT TCCTCTTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320549999	CHEV_2_147199658	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229678377					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147215842 () rs orientation: forward

Symbol	Name	Function Class
Pax1	paired box 1	mRNA-UTR
Rr566789	regulatory region 566789	1713 bp distal
Rr566790	regulatory region 566790	within coordinates
Rr566791	regulatory region 566791	378 bp proximal
Tssr20631	transcription start site region 20631	59 bp downstream
Tssr20632	transcription start site region 20632	3 bp downstream
Tssr20633	transcription start site region 20633	25 bp upstream
Tssr20634	transcription start site region 20634	113 bp upstream
Tssr20635	transcription start site region 20635	1606 bp upstream