rs229683672 SNP Detail

Summary

• ID
  rs229683672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102209039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCAGCCCG CCCGCCTCGC
  CGGCTCCGCT CCCTCCCACA GCCTGCCCGG GCGGGCTCCG CGGGGGGCAG CTGGGAGGAG
  GGGCGGGCGC TGGGGGGACC CGGGCGGCCG AGGCGGAGGC AAGGAAGGAG GGGAGGGGGG
  TGGTGGTAGT GGCGGCGGCG GCTGCTGCTG TTGCTGCCGC CGGGGAAGGG GGGGGCCGGG
  R
  CAGGGAAGAC ACGCAGCCGC CCGGATGGCG GCGGGGCTGC GAGCCGAGGC GGGCGAGCAA
  GCGGGCGGCT AAAGCGACCT CGCCAGCCCC GCGGGGGAAC TAGCAGGCTT GGCCGGCGCG
  GGAGGAAGGG AGGGCCGAGG TGCGGCGGTG GAGAGGGTGG CCGGCGAGCC TCGCGGGTGC
  CGGCAACCCT GCTCTGGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384500223	MGP_WTSI_11_102179527	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229683672					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384500223	MGP_WTSI_11_102179527	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102209039 () rs orientation: forward

Symbol	Name	Function Class
C030013E06Rik	RIKEN cDNA C030013E06 gene	1546 bp downstream
Cpgi3917	CpG island 3917	within coordinates
Rr245873	regulatory region 245873	within coordinates
Tssr105213	transcription start site region 105213	1354 bp downstream
Tssr105214	transcription start site region 105214	1244 bp downstream
Tssr105215	transcription start site region 105215	1198 bp downstream
Tssr111024	transcription start site region 111024	1567 bp upstream
Tssr111025	transcription start site region 111025	1535 bp upstream
Tssr111026	transcription start site region 111026	1505 bp upstream
Tssr111027	transcription start site region 111027	571 bp upstream
Tssr111028	transcription start site region 111028	428 bp upstream
Tssr111029	transcription start site region 111029	397 bp upstream
Tssr111030	transcription start site region 111030	336 bp upstream
Tssr111031	transcription start site region 111031	152 bp upstream
Tssr111032	transcription start site region 111032	728 bp downstream
Tssr111033	transcription start site region 111033	880 bp downstream
Tssr111034	transcription start site region 111034	1129 bp downstream
Tssr111035	transcription start site region 111035	1169 bp downstream
Tssr111036	transcription start site region 111036	1612 bp downstream
Ubtf	upstream binding transcription factor, RNA polymerase I	within coordinates