rs229691419 SNP Detail

Summary

• ID
  rs229691419
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52139360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCGCCTT CGTCCTCTAA
  AGCGGGCCAT GCCCACGACC TGGACTAAAG TGTCTAACGA GGGACTCCTG CCGGGCAGGT
  GTGCGGGAGA GGCAAAGACG CCAAGTAAGT CCGCATCCCG GCCATGACCC TCACTTCACC
  AGCCCAGTCC TCCCGAATGT CTGAGCGCGC TCGAGAGAAG GGCCAGCAAG ACCCCGGCAC
  K
  CGAGGGGCGC AGAGTCGCCC CAGCCGGGGC CACTGAGAAG TTTGGATCGG TTCCGCATCC
  GCAGAAAACG GAGGCGAGCC GGGCAAGAGA CCCAGAGCGG GAGCAGCACT GGCAGGGAGC
  AAAGAAGCGG GACTCACTCA GGCGTGGAAC CGGGACAGCG CGGGCCAGCG GTGCGGGCCG
  AGGCCGGGTC GGCTCCCCGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398453327	MGP_WTSI_17_51971657	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229691419					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398453327	MGP_WTSI_17_51971657	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52139360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9312	CpG island 9312	within coordinates
Gm6934	predicted gene 6934	487 bp upstream
Rr370288	regulatory region 370288	873 bp upstream
Rr528751	regulatory region 528751	within coordinates
Rr528752	regulatory region 528752	330 bp proximal
Rr528753	regulatory region 528753	629 bp proximal
Rr528754	regulatory region 528754	948 bp proximal
Satb1	special AT-rich sequence binding protein 1	within coordinates
Tssr145166	transcription start site region 145166	425 bp upstream
Tssr145167	transcription start site region 145167	446 bp upstream
Tssr145168	transcription start site region 145168	483 bp upstream
Tssr145169	transcription start site region 145169	675 bp upstream
Tssr145170	transcription start site region 145170	688 bp upstream
Tssr145171	transcription start site region 145171	910 bp upstream
Tssr148679	transcription start site region 148679	437 bp upstream
Tssr148680	transcription start site region 148680	275 bp downstream
Tssr148681	transcription start site region 148681	303 bp downstream
Tssr148682	transcription start site region 148682	334 bp downstream
Tssr148683	transcription start site region 148683	360 bp downstream
Tssr148684	transcription start site region 148684	743 bp downstream
Tssr148685	transcription start site region 148685	781 bp downstream
Tssr148686	transcription start site region 148686	873 bp downstream
Tssr148687	transcription start site region 148687	918 bp downstream
Tssr148688	transcription start site region 148688	946 bp downstream