rs229692319 SNP Detail

Summary

• ID
  rs229692319
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174136766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTTGCAA CCCCTCCTAT
  TGGAGGCCTT CTCTTTCCAT TTTCATGCCG TTCTGCTCTT TCACAAGGAG ACTGGCATGC
  TCTGGAGGTT TCTCCCTGTC AGAGAAGCAC GATATAAGAA AGAATGTGGA ACAAAGGATT
  CTCACAGATC ATAAGAATGT CTGAACAAAG AGAACCTGAA ACCATTTTTT TTTCCTTTTG
  K
  ATGAATGGTG CTTTAGGGAT GGGTGTGAGA GGCCTGGAGA GCCCACAAGA CCCGCGTGGC
  GGTCTCCTTG GGTCGCCAAC CTCAGCGTCT ACTGACCTTT CACCTTGTGC AGGGTTCAGC
  ATCTCTGGGA AATGAAATCT GTCCATCTTG TACTGCTCGT CTGCATCGGA GCAGTAAGCT
  CTCTTTCTCC ATAGGCCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356686879	MGP_WTSI_2_174120474	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229692319					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356686879	MGP_WTSI_2_174120474	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174136766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12856	CpG island 12856	224 bp proximal
Cpgi12857	CpG island 12857	1966 bp proximal
Gm56458	predicted gene, 56458	98 bp upstream
Gm56459	predicted gene, 56459	364 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr374311	regulatory region 374311	within coordinates
Rr572094	regulatory region 572094	within coordinates
Rr572095	regulatory region 572095	423 bp proximal
Rr572096	regulatory region 572096	476 bp proximal
Tssr22102	transcription start site region 22102	203 bp downstream
Tssr22103	transcription start site region 22103	639 bp upstream
Tssr28008	transcription start site region 28008	812 bp upstream
Tssr28009	transcription start site region 28009	428 bp downstream