rs229693256 SNP Detail

Summary

• ID
  rs229693256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8972070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTTGATT GGGCGTGATC
  TGTTTCAATC TCCACATCTT CTCCAATCAG AAGCCAGGTA GCCCGGCCTT CCGCTCTTCG
  TTGGTCTGTA TGTGGCAGAA GGCGGAGGGA GAGATTCCGA GCCGACGTCC CGCGAGAGCG
  GCGCCGGGCG CCCAGAGCGC AGGCGCACAG GAGTTGGCAA GGGCCCGGGC CGAGGGCGGG
  Y
  CAGAAGACGC GTCCTTTGGC TGTGGACACC GTCGTAGAGT CGTCTGGGTT GAACCGCTGG
  GCCGAAAGCT TTTGTCAGGG GCCTGGGCGA GAACGAGGCC CGCGAGGTTC CGGATGGTGT
  CCATGACTTT CAAACGGAGC CGCAGCGACC GGTTCTACAG CACCCGGTGC TGCGGCTGTT
  GCCATGTCCG CACCGGGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385082904	MGP_WTSI_12_8928876	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229693256					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385082904	MGP_WTSI_12_8928876	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8972070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	within coordinates
Gm60663	predicted gene, 60663	211 bp upstream
Laptm4a	lysosomal-associated protein transmembrane 4A	2 bp upstream
Rr403227	regulatory region 403227	within coordinates
Rr462715	regulatory region 462715	462 bp distal
Rr462716	regulatory region 462716	222 bp distal
Rr462717	regulatory region 462717	303 bp distal
Rr462718	regulatory region 462718	within coordinates
Rr462719	regulatory region 462719	533 bp proximal
Rr462720	regulatory region 462720	1280 bp proximal
Tssr112751	transcription start site region 112751	399 bp downstream
Tssr112752	transcription start site region 112752	366 bp downstream
Tssr112753	transcription start site region 112753	360 bp downstream
Tssr112754	transcription start site region 112754	42 bp downstream
Tssr112755	transcription start site region 112755	16 bp downstream
Tssr112756	transcription start site region 112756	within coordinates
Tssr115725	transcription start site region 115725	197 bp upstream