rs229693473 SNP Detail

Summary

• ID
  rs229693473
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7440837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCAATG GACAGCCACG
  CGGGAGTGAC GTACAGGTGA TTGACAAGCA GGAGAAGCTA GCAACCAATG AGGACGCCCG
  CGCGTGGGCG GGATGGAAGG CGGGATGATA ACGGAATCAA TGGAGAGGCC TGAGTAGGGT
  TAATGCGGGC CCGAAGATGT AGCAGCAGGA GTATGACAAT TAGTGGGAAA GTCTGAGCAC
  K
  AAGGGCATGG TAGGCGGCGG GAAGATGAAA TGGCTACAAG CAATGGGGGC AACGGGGAGC
  GAACCCAGAG GTCCAAAAAC TGGGAGATCC GCAGGTTGCG TAGGCGGTGA GACGTAAGAC
  AGATAAAATG AACAGCCAAT GGAGAACTGC ACGCGAATGA TGTAGAGACA GAATGACGAT
  AATAGTTGCA ATGAGCCAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403003140	MGP_WTSI_X_7151724	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229693473					SNP	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403003140	MGP_WTSI_X_7151724	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7440837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22568	CpG island 22568	within coordinates
Flicr	Foxp3 regulating long intergenic noncoding RNA	within coordinates
Gm36995	predicted gene, 36995	within coordinates
Ppp1r3f	protein phosphatase 1, regulatory subunit 3F	296 bp upstream
Rr406079	regulatory region 406079	36 bp downstream
Rr689614	regulatory region 689614	988 bp distal
Rr689615	regulatory region 689615	within coordinates
Tssr160374	transcription start site region 160374	1975 bp downstream
Tssr160375	transcription start site region 160375	1948 bp downstream
Tssr160376	transcription start site region 160376	1927 bp downstream
Tssr160377	transcription start site region 160377	1909 bp downstream
Tssr160378	transcription start site region 160378	1875 bp downstream
Tssr160379	transcription start site region 160379	1848 bp downstream
Tssr160380	transcription start site region 160380	1789 bp downstream
Tssr160381	transcription start site region 160381	1351 bp downstream
Tssr162796	transcription start site region 162796	1740 bp upstream
Tssr162797	transcription start site region 162797	286 bp upstream