rs229696236 SNP Detail

Summary

• ID
  rs229696236
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:146789078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC ACAGCCCCTA TCTCACAACT
  K
  GGAGAATTCA ATGCTTCTAG CCTCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322083549	CHEV_6_146836102	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229696236					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:146789078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18173	CpG island 18173	446 bp proximal
Gm66444	predicted gene, 66444	422 bp downstream
Ppfibp1	PTPRF interacting protein, binding protein 1 (liprin beta 1)	907 bp upstream
Tssr59600	transcription start site region 59600	901 bp upstream
Tssr59601	transcription start site region 59601	1013 bp upstream
Tssr59602	transcription start site region 59602	1052 bp upstream