rs229701955 SNP Detail

Summary

• ID
  rs229701955
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3286323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGCTGCT TGGTTTTGTT
  CTACCCAGGT TTATATAACC TCCCCTGACC TGTATAAATT AGCATATCGT GTACGTTGGG
  AATTTGCATA CGCTCATGTG ACATCAGTTT CGCATGATGA AAATTTGCAT AAATTTGCAT
  AATGACAGCT CCCCTGAGTA AATTTCCATA AACATAAACG ATGTTATGGC TTTACTCTGC
  R
  TGTATTTGTC ATGTAAATTT GCATGCATTT GCATAAAACT GCATGACGTT ATGGCTTTTC
  CTGAGTTCAG ATGATGTCAC AGTTTCCCTC CTTGCCATTG ACACGTGTCC AGATGATGTC
  ATCACCCTGT GACACCCCCC CCCCCGCATT TGTATATATT GTATATATTC TCTTGACGTC
  CTGGCTGGGG GTGTGCCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323871534	CHEV_12_3236323	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229701955					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3286323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4353	CpG island 4353	283 bp distal
Gm60416	predicted gene, 60416	within coordinates
Rab10os	RAB10, member RAS oncogene family, opposite strand	within coordinates
Rr256055	regulatory region 256055	1678 bp proximal
Rr265316	regulatory region 265316	within coordinates
Rr267101	regulatory region 267101	1851 bp proximal
Tssr112476	transcription start site region 112476	801 bp downstream
Tssr112477	transcription start site region 112477	522 bp downstream
Tssr112478	transcription start site region 112478	484 bp downstream
Tssr115578	transcription start site region 115578	1026 bp upstream