rs229702124 SNP Detail

Summary

• ID
  rs229702124
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104993724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAATCATA TACTTGGGTA
  CCTTTGATCC CATGGAAAAA TTATCTAACA TTCAGAACTA CTGATAACAG GAAGAAGAGG
  AAAAAAATTT TTTATTTTGA GAATGAAATT TTTCCTCTCA TAGAGTACTT TTTTTAACCT
  ATTCTTTTTT AAAAAAATGA TTTATTTATT TATGTATATG AATACACTGT TGCTGTCTTC
  R
  GACACACCAG AAGAGGGCAT CAGATGTCAT TACAGATGGT TGTGAGCCAC CATGTGGTTT
  CTGGGAACTC AGGACTCATG GACGAGCAGT CAGTGCCCCT CACCACTGAG CCATCTCTCC
  AGCCCCATAG TGGACTCTTA AGCATGTTCT CTGCGTGTGT AGCTGGATAT CTTTTGGAGA
  TTTACATGTT TGGCATGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387200308	MGP_WTSI_12_106265675	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229702124					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387200308	MGP_WTSI_12_106265675	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104993724 () rs orientation: forward

Symbol	Name	Function Class
Gm47648	predicted gene, 47648	within coordinates
Gm47650	predicted gene, 47650	177 bp downstream
Rr403484	regulatory region 403484	294 bp upstream
Rr472053	regulatory region 472053	669 bp distal
Rr472054	regulatory region 472054	1983 bp distal
Rr472055	regulatory region 472055	1747 bp distal
Rr472056	regulatory region 472056	within coordinates
Rr472057	regulatory region 472057	3 bp proximal
Rr472058	regulatory region 472058	434 bp proximal
Rr472059	regulatory region 472059	1762 bp proximal