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rs229710711 SNP Detail
Summary
  • ID
    rs229710711
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:57531222 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGTGACGGAA GATGGAAGTT
GGGATTAGCC CTGGCTCTTA CCATGAGGTC AAAGGGCATG GCTGGCTTGA AGAATTTGGG
TGTCTTGGTG AAGTGGATCT GGTACGGGGA AGTGACAATC GGGATCCCAC TGCGCTCTGC
CTCTACCATG TCACTACCTG AGGAAACGGA TGGAAGCAGT GAAGGCAGGC TTCCCAAAAG
Y
CCTTCAGAGC CCAGCCTCCT CGCTCAGACT AGCCTTGCCA CCCCTTAGTC AAAGCAAGCC
TCACCTGAGT GCAGGATGAC AGTGACGGAG ACATACAGGG ACTTCCCCAC CAGGGCGTCG
GCGTTGGAAG GCCGTACCCC CTCCATCAGC ACCTTCCGGG TCAGCACTGC ATCCCCCACA
CCATCCTCAA TCTGCAGAGG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398573189 MGP_WTSI_17_57363645 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229710711 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398573189 MGP_WTSI_17_57363645 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:57531222 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
C3 complement component 3 within coordinates
Cpgi9399 CpG island 9399 100 bp proximal
Tssr145377 transcription start site region 145377 1991 bp downstream
Tssr145378 transcription start site region 145378 1087 bp downstream
Tssr145379 transcription start site region 145379 1012 bp downstream
Tssr145380 transcription start site region 145380 967 bp downstream
Tssr145381 transcription start site region 145381 913 bp downstream
Tssr145382 transcription start site region 145382 359 bp downstream
Tssr145383 transcription start site region 145383 282 bp downstream
Tssr145384 transcription start site region 145384 112 bp downstream
Tssr145385 transcription start site region 145385 1027 bp upstream
Tssr145386 transcription start site region 145386 1803 bp upstream
Tssr148940 transcription start site region 148940 1949 bp upstream
Tssr148941 transcription start site region 148941 1876 bp upstream
Tssr148942 transcription start site region 148942 1376 bp upstream
Tssr148943 transcription start site region 148943 1336 bp upstream
Tssr148944 transcription start site region 148944 1322 bp upstream
Tssr148945 transcription start site region 148945 1285 bp upstream
Tssr148946 transcription start site region 148946 1273 bp upstream
Tssr148947 transcription start site region 148947 1023 bp upstream
Tssr148948 transcription start site region 148948 939 bp upstream
Tssr148949 transcription start site region 148949 883 bp upstream
Tssr148950 transcription start site region 148950 329 bp upstream
Tssr148951 transcription start site region 148951 300 bp upstream
Tssr148952 transcription start site region 148952 240 bp upstream
Tssr148953 transcription start site region 148953 59 bp upstream
Tssr148954 transcription start site region 148954 34 bp upstream
Tssr148955 transcription start site region 148955 97 bp downstream
Tssr148956 transcription start site region 148956 130 bp downstream
Tssr148957 transcription start site region 148957 658 bp downstream
Tssr148958 transcription start site region 148958 881 bp downstream
Tssr148959 transcription start site region 148959 1041 bp downstream
Tssr148960 transcription start site region 148960 1795 bp downstream
Tssr148961 transcription start site region 148961 1832 bp downstream
Tssr148962 transcription start site region 148962 1978 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory