rs229711437 SNP Detail

Summary

• ID
  rs229711437
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103284247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTCTGA GTGACTCCTT
  GCCTTTCCAG ATCTGGGGGC TTTTCTTCCT CTGTCATAGT CTTGCTATTT CCTTGTGATA
  AGTCTTCAAG AGTGGGATGC CCAGTAAAGA GAGTGTGCAC TCTTCTCACC TATGGCCCCT
  AGCTGGGACA GGCCATCCCT CTGTAATTAT AACTTAGTTT TTCTTATGTC TGTGAGGAAT
  Y
  ATCAGATTAT GGCCGCTGTA ACACCTCCTC TCATCAGCCC TACATCTATA AGGGAGCTCT
  ACACAACACA ACAAAGGAAG TTTAAGTGAG GTCATTGGGG AGGTGTTGAA ATGGTGGAAA
  TTCCATGGTT GAAACAAAAG TGAAAGGGAC AGACCTGGAG GGAGTGACTG TGTATAAAGG
  CACACGTCCA CTAAAGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392295877	MGP_WTSI_14_103446028	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229711437					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392295877	MGP_WTSI_14_103446028	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103284247 () rs orientation: forward

Symbol	Name	Function Class
Acod1	aconitate decarboxylase 1	201 bp upstream
Gm41235	predicted gene, 41235	within coordinates
Rr496962	regulatory region 496962	1882 bp proximal
Tssr126971	transcription start site region 126971	196 bp upstream
Tssr130073	transcription start site region 130073	16 bp downstream
Tssr130074	transcription start site region 130074	1552 bp downstream
Tssr130075	transcription start site region 130075	1597 bp downstream
Tssr130076	transcription start site region 130076	1614 bp downstream
Tssr130077	transcription start site region 130077	1889 bp downstream
Tssr130078	transcription start site region 130078	1903 bp downstream
Tssr130079	transcription start site region 130079	1928 bp downstream