rs229722396 SNP Detail

Summary

• ID
  rs229722396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97878887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGTGCCC GTTCTCCATA
  AAGTCTTGTA TTGGGGCTCA GGCAAAAGCA ACAACTTGGA AATATTAGAA GCAAATGGCG
  TGGACAAGTT TCTAACCGTA AGCCTCTAGA ACTTGAGCAT GCACGGGAAG TACTTCTCAG
  AACGCATATT TCTAGCCCCA CCCAGGGATA GTTCACTGGG TCAGAGAGGA GGCCAAGAAT
  Y
  TTCATGTCTA GCACGAGCCC AAGTCCCGTG GTGCTAGTCA CATTCGGAGA GCCACTGCCC
  TGAAAATTCC CAGTTCCTTA CCACCGTCCC CGCTCCCTGA CTGTTTGGGA GTTGGCGATG
  GAAATATTGC CATAAAAATA TGCGGGACGT AATAAGGTCT TCCAAAGAAA AGAGTGAGCC
  TGCTAGGGGG CACCCGGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384402928	MGP_WTSI_11_97849375	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229722396					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384402928	MGP_WTSI_11_97849375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97878887 () rs orientation: forward

Symbol	Name	Function Class
Arl5c	ADP-ribosylation factor-like 5C	1517 bp downstream
Cpgi3730	CpG island 3730	1014 bp distal
Cpgi3731	CpG island 3731	71 bp distal
Cpgi3732	CpG island 3732	359 bp proximal
Gm71812	predicted gene, 71812	746 bp upstream
Gm74242	predicted gene, 74242	within coordinates
n-TCgca54	nuclear encoded tRNA cysteine 54 (anticodon GCA)	862 bp downstream
n-TCgca55	nuclear encoded tRNA cysteine 55 (anticodon GCA)	185 bp downstream
Plxdc1	plexin domain containing 1	1617 bp upstream
Rr247674	regulatory region 247674	within coordinates
Rr402924	regulatory region 402924	202 bp downstream
Rr402925	regulatory region 402925	23 bp upstream
Rr402926	regulatory region 402926	771 bp upstream
Tssr110492	transcription start site region 110492	1589 bp upstream
Tssr110493	transcription start site region 110493	629 bp downstream
Tssr110494	transcription start site region 110494	647 bp downstream