rs229724709 SNP Detail

Summary

• ID
  rs229724709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5915423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGTAATG GCGACGCCTC
  CCCAGATGGC AGAAGACGGG TACATCGGTG CCACTTTAAT GGCTGCAGGA AAGTTTACAC
  GAAAAGCTCC CACTTGAAAG CACATCAGCG CACTCACACA GGTCAGTCCC CTCTTGGGGC
  CTGGGTGGTC AGCTGCTGGT GGGCGCCCTC AGTCGATCAG CACTGGGAGG GAGCCAGGAC
  Y
  CCCCCAGGAT GCGGTCACAA GCAAGACAGT CCTCACTTCC TAGATTCTTG TCTCTAAGGA
  ATTGGGTCTT TTTTGGAGTT CAGAGTAGAA TCTTAAAAGA CTGGACATTT GAATCAGATG
  AATGGTTCAT GCTTTCAGAT TAAACAGGAG GCCAGATCAC ATTCTCCATG GATACCCAAA
  CCTTCACCCA CTGGGTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324224097	CHEV_13_5864670	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229724709					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5915423 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr403559	regulatory region 403559	583 bp downstream
Tssr118246	transcription start site region 118246	1598 bp downstream
Tssr118247	transcription start site region 118247	1528 bp downstream
Tssr118248	transcription start site region 118248	927 bp downstream
Tssr118249	transcription start site region 118249	722 bp downstream
Tssr118250	transcription start site region 118250	656 bp downstream
Tssr118251	transcription start site region 118251	621 bp downstream
Tssr118252	transcription start site region 118252	563 bp downstream
Tssr118253	transcription start site region 118253	986 bp upstream
Tssr118254	transcription start site region 118254	1013 bp upstream
Tssr121319	transcription start site region 121319	1110 bp upstream
Tssr121320	transcription start site region 121320	1073 bp upstream
Tssr121321	transcription start site region 121321	1062 bp upstream
Tssr121322	transcription start site region 121322	1021 bp upstream