rs229727261 SNP Detail

Summary

• ID
  rs229727261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACCTTCT CCATCCCAGG
  CCCACTCACA CAAGAAAGAA CACAGGCTTT TGTAGGTTGC AAGTCCTGGT CTGGTTTATT
  TATAAAGCAA TAAATATTTG AAGCACAAAC AAACTGCACT TGTGTAAACA AACTGTACAA
  TGACTGATGA GAGATGGGGA GGGGGCTCAG AGGATTCCAA GAAGCACAAT ACGGTCATCC
  Y
  GAATATAAGG TAGGCTAAGA GAGAGACATC TCAGAAGCAC TTGCGGTGGA CAATGGATGG
  GCCTGCCTCA TCATACTCTT GCTTGCTGAT CCACATTTGC TGGAAGGTGG ACAGAGAGGC
  CAGGATGGAG CCCCCAATCC AGACAGAGTA TTTACGCTCA GGGGGAGCAA TAATCTGCAG
  AGAGAAAACA AAACCATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315507	MGP_WTSI_2_113873171	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229727261					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315507	MGP_WTSI_2_113873171	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877916 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562815	regulatory region 562815	1725 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	127 bp downstream
Tssr601	transcription start site region 601	137 bp downstream
Tssr19429	transcription start site region 19429	138 bp downstream
Tssr19430	transcription start site region 19430	28 bp downstream
Tssr19431	transcription start site region 19431	24 bp upstream
Tssr19432	transcription start site region 19432	120 bp upstream
Tssr19433	transcription start site region 19433	686 bp upstream
Tssr19434	transcription start site region 19434	739 bp upstream
Tssr19435	transcription start site region 19435	1734 bp upstream
Tssr25660	transcription start site region 25660	117 bp upstream
Tssr25661	transcription start site region 25661	96 bp upstream
Tssr25662	transcription start site region 25662	within coordinates
Tssr25663	transcription start site region 25663	13 bp downstream
Tssr25664	transcription start site region 25664	43 bp downstream
Tssr25665	transcription start site region 25665	151 bp downstream
Tssr25666	transcription start site region 25666	718 bp downstream
Tssr25667	transcription start site region 25667	745 bp downstream
Tssr25668	transcription start site region 25668	781 bp downstream
Tssr25669	transcription start site region 25669	810 bp downstream
Tssr25670	transcription start site region 25670	1766 bp downstream
Tssr25671	transcription start site region 25671	1809 bp downstream
Tssr25672	transcription start site region 25672	1878 bp downstream
Tssr25673	transcription start site region 25673	1913 bp downstream