rs229734569 SNP Detail

Summary

• ID
  rs229734569
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:73001869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTGAGA CAGGGTTTCT
  CTGTGTAGCC CTAGCTGTCC TGGAACTCAC TCTGTAGACC AGGCTGGCCT TGAACTCAGA
  AATCCACCTG CCTCTGCCTC CCAAGTGCTG GGATTAAAGG CGGGTGCCTC CCCGCCCGGC
  ACTTTGAGTT TTGATATAAT TATGCTTCCC TGTGCACTGG CTATTGTATT ACACCAAGAA
  M
  CCCCCCCCCC CCCCCCATTG TACTGCACTT AAATAAACCT CCTGGCGTCA GACTGCAGAA
  GGAAACATTT CCTTTCCGGC TGTGATGCTT GCGCACACGC CCCTCCACAC ACACACCTGA
  AGGTCATTCT GCTATTACTT GGCGCTCCTG TAATCGGTCT CCAGGAAACG CCCCGCTCAA
  TTCTCTGTGG CAGCTACTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss378032795	MGP_WTSI_9_72942394	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs229734569					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378032795	MGP_WTSI_9_72942394	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:73001869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22027	CpG island 22027	695 bp proximal
Rab27a	RAB27A, member RAS oncogene family	within coordinates
Rr206717	regulatory region 206717	131 bp proximal
Tssr86085	transcription start site region 86085	617 bp downstream
Tssr86086	transcription start site region 86086	239 bp upstream
Tssr86087	transcription start site region 86087	257 bp upstream