rs229734770 SNP Detail

Summary

• ID
  rs229734770
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156767386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTGC CCCAGCCGCA GGCGCAGCAC
  S
  GGCCGCAAGG ACGAGCCGCA GGGTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss352049343	MGP_WTSI_1_158869947	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	C	C	G	G	C	C	C	C	C	C	C	G	G	G	C	C	G	G	G	C	G	G	C	C	C	G	G	C	C	G	G	C	G	G	C	C	C	G	C	C	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs229734770					SNP	C	C	G	C	C	G	G	C	C	C	C	C	C	C	G	G	G	C	C	G	G	G	C	G	G	C	C	C	G	G	C	C	G	G	C	G	G	C	C	C	G	C	C	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352049343	MGP_WTSI_1_158869947	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156767386 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	within coordinates
Cpgi904	CpG island 904	within coordinates
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	190 bp upstream
Rr19959	regulatory region 19959	1615 bp proximal
Rr28786	regulatory region 28786	within coordinates
Rr367037	regulatory region 367037	817 bp downstream
Tssr9581	transcription start site region 9581	127 bp downstream
Tssr14474	transcription start site region 14474	1974 bp upstream
Tssr14475	transcription start site region 14475	1007 bp upstream
Tssr14476	transcription start site region 14476	963 bp upstream
Tssr14477	transcription start site region 14477	267 bp upstream
Tssr14478	transcription start site region 14478	201 bp upstream
Tssr14479	transcription start site region 14479	159 bp upstream
Tssr14480	transcription start site region 14480	210 bp downstream