rs229736380 SNP Detail

Summary

• ID
  rs229736380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56981171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGGCCTT CCCCTTCTGG
  GGTAAGCTAG GAGGAGACGT TCTCCTCCCT GCCCCCCCTT TCTCGTGAGC GCGCTCAGCA
  CATGGTTGAG GCCCTTTTAG CTCCCTGCAA CTTCCCTCCC GCCCGGAAGT CTCAGGCTCC
  GCGCCCTTAG TTAGGGGGGC GGGGAAAGCC TTGGAGGCAC ACAAAGATTC TTCCGAGTCT
  R
  GGGATCGGCT AGCCTTCGAG GTGAAGCCCG ACAATTGCGC TGTTACTCCA GAAAGCATCG
  CTCCAGGGCT GCTGCACGGA GGGGAGGGAA TGAGTTCTAC CCTCCAGCCC GATCAACTTT
  TGCTGTTTTT CTCCGTGCCC CTTGACTTCC TTAAATTTAA GTTTCAGAAA GCTTGGACAT
  TGGCCGCATC CTTAATTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377681853	MGP_WTSI_9_56921694	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229736380					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377681853	MGP_WTSI_9_56921694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56981171 () rs orientation: forward

Symbol	Name	Function Class
2700012I20Rik	RIKEN cDNA 2700012I20 gene	1316 bp downstream
Cpgi21807	CpG island 21807	within coordinates
Cpgi21808	CpG island 21808	567 bp proximal
Cpgi21809	CpG island 21809	1788 bp proximal
Gm10658	predicted gene 10658	1921 bp upstream
Gm57026	predicted gene, 57026	within coordinates
Rr368762	regulatory region 368762	within coordinates
Rr401391	regulatory region 401391	1786 bp downstream
Rr401392	regulatory region 401392	1287 bp upstream
Rr679580	regulatory region 679580	1956 bp distal
Rr679581	regulatory region 679581	1429 bp distal
Rr679582	regulatory region 679582	812 bp distal
Rr679583	regulatory region 679583	135 bp distal
Rr679584	regulatory region 679584	391 bp distal
Rr679585	regulatory region 679585	311 bp distal
Rr679586	regulatory region 679586	961 bp proximal
Rr679587	regulatory region 679587	1462 bp proximal
Rr679588	regulatory region 679588	1947 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)	within coordinates
Tssr2884	transcription start site region 2884	1548 bp upstream
Tssr85282	transcription start site region 85282	1839 bp downstream
Tssr85283	transcription start site region 85283	1811 bp downstream
Tssr85284	transcription start site region 85284	133 bp downstream
Tssr85285	transcription start site region 85285	15 bp downstream
Tssr89753	transcription start site region 89753	1982 bp upstream