rs229736388 SNP Detail

Summary

• ID
  rs229736388
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152777431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCAAAATC CGTCAAACTA TTCTGACTGC
  ACACCAGCTG CTGTCTTTCC ATTCAAAATG TTCTCGACGT CGGTGTTAAT GCATGTGAGT
  CTTCTTTAAG TGTGCATCAA TCCCTGCTTC CCCTCCCTTA CCCCAGacac tcacacacac
  W
  cacacacaca cacacacaca catacacata cacacgcacg cacCCCCAGT ACCCATGGGT
  CACTCTATCT CCTTCATACA AGTTCCTTAC ATCGCACCTA ATGAATGCAC ACGACTCTCA
  GAATGGTATC TTCCAACTAC AGTTTCTTTC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068818	CHEV_1_154748810	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229736388					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152777431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi860	CpG island 860	53 bp proximal
D1Mit502	DNA Segment, Chr 1 Massachusetts Institute of Technology 502	within coordinates
Rr396386	regulatory region 396386	647 bp upstream
Rr396387	regulatory region 396387	1452 bp upstream
Rr420557	regulatory region 420557	within coordinates
Rr420558	regulatory region 420558	932 bp proximal
Rr420559	regulatory region 420559	1887 bp proximal
Smg7	SMG7 nonsense mediated mRNA decay factor	within coordinates
Tssr9437	transcription start site region 9437	1164 bp upstream
Tssr9438	transcription start site region 9438	1217 bp upstream
Tssr14242	transcription start site region 14242	948 bp downstream
Tssr14243	transcription start site region 14243	1056 bp downstream
Tssr14244	transcription start site region 14244	1077 bp downstream
Tssr14245	transcription start site region 14245	1383 bp downstream
Tssr14246	transcription start site region 14246	1408 bp downstream