rs229741671 SNP Detail

Summary

• ID
  rs229741671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80415105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGTAAG TAAGGTTGGT
  TGTACAACCA CCAGGTGGTG CCACTTAGCA TGCCCCAAGC ACATTTGTGT CCTAAGGGCT
  TAAGCCTGTG AGAGCCGGCT GTGAGCTAAT CCTGCCATTG CATGTAGCAG CCCCCCATTA
  CCGTTCATGC ATATTAGCCT CATACCCCAA GCCCCAGACA CGAGGTGGAT CGGTTGTTGA
  Y
  CTGACCCAGG AGAGACCTAA AAACAGTCGC CCTACCTTAC AGATGGCACA GTCAAGGCTG
  AGGACTCTGG GAAAATATCC AGCCTGCTCC CACAAGAACA GGAGTACTGG TAAGTCACTC
  TTTCTGATGG TATCCCTAGG GCTCAAACAC TTGGTCCTTG CTAGTCCCAC GGGGGAGCTC
  TGGTTTGTCC TTTGTTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381021731	MGP_WTSI_10_80042016	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229741671					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381021731	MGP_WTSI_10_80042016	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80415105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1896	CpG island 1896	579 bp distal
Gm26710	predicted gene, 26710	within coordinates
Klf16	Kruppel-like transcription factor 16	1975 bp upstream
Rr402055	regulatory region 402055	532 bp downstream
Rr435300	regulatory region 435300	1195 bp distal
Rr435301	regulatory region 435301	1774 bp distal
Rr435302	regulatory region 435302	within coordinates
Rr435303	regulatory region 435303	668 bp distal
Rr435304	regulatory region 435304	156 bp distal
Rr435305	regulatory region 435305	1344 bp proximal
Tssr98472	transcription start site region 98472	1997 bp upstream
Tssr98473	transcription start site region 98473	1944 bp upstream