rs229752503 SNP Detail

Summary

• ID
  rs229752503
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTATAGC AGGGAAAATC
  AAGGTTAACT TCAGTTCAGG AACCTGAATT ATTATTTTCA TTGTTAACTT TGTCCTGTGA
  GCATCAGTTT GAATTGATAG AAGGGTACGA CTAGCTCCTT TCATCTACAC ACGTAAAAGT
  CCTTCCTTAA TGGATGGTCG CTGTGTGTCC CTAAGAATTA AGTAGATAGA ACCAACTAGC
  K
  CTGGTGTAAA GCCTGTTATC TATTAAGATT CAATACTTTA CCCCTGCCCT TTCCATGTCT
  GTGGGCTGTA AAGTCTAACT CTTGGTTTTG GTCAAGGTGA GCCTCTAAGG CTTCCCGATG
  AAGAAGAGCT GGGGTTTCCA GTGAGAGGCT TGAAATTCAG GTGTAGGCTC TCGCTCTTAT
  CCTGACTGAG TTCAGTGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847502	MGP_WTSI_5_91333713	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229752503					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847502	MGP_WTSI_5_91333713	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052546 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1483 bp upstream
Rr614420	regulatory region 614420	1494 bp distal
Rr614421	regulatory region 614421	1625 bp distal
Rr614422	regulatory region 614422	804 bp distal
Tssr47224	transcription start site region 47224	978 bp downstream
Tssr47225	transcription start site region 47225	876 bp downstream
Tssr47226	transcription start site region 47226	807 bp downstream
Tssr47227	transcription start site region 47227	613 bp downstream
Tssr47228	transcription start site region 47228	550 bp downstream
Tssr47229	transcription start site region 47229	529 bp downstream
Tssr47230	transcription start site region 47230	504 bp downstream
Tssr47231	transcription start site region 47231	474 bp downstream
Tssr47232	transcription start site region 47232	327 bp downstream
Tssr47233	transcription start site region 47233	277 bp downstream
Tssr47234	transcription start site region 47234	242 bp downstream
Tssr47235	transcription start site region 47235	501 bp upstream
Tssr47236	transcription start site region 47236	521 bp upstream
Tssr47237	transcription start site region 47237	570 bp upstream
Tssr47238	transcription start site region 47238	576 bp upstream
Tssr47239	transcription start site region 47239	636 bp upstream
Tssr47240	transcription start site region 47240	648 bp upstream
Tssr47241	transcription start site region 47241	663 bp upstream
Tssr47242	transcription start site region 47242	700 bp upstream
Tssr47243	transcription start site region 47243	723 bp upstream
Tssr47244	transcription start site region 47244	757 bp upstream
Tssr47245	transcription start site region 47245	777 bp upstream
Tssr47246	transcription start site region 47246	828 bp upstream
Tssr47247	transcription start site region 47247	872 bp upstream
Tssr47248	transcription start site region 47248	935 bp upstream
Tssr47249	transcription start site region 47249	1005 bp upstream
Tssr47250	transcription start site region 47250	1143 bp upstream
Tssr47251	transcription start site region 47251	1207 bp upstream
Tssr47252	transcription start site region 47252	1259 bp upstream
Tssr51810	transcription start site region 51810	1544 bp upstream
Tssr51811	transcription start site region 51811	1490 bp upstream
Tssr51812	transcription start site region 51812	460 bp upstream
Tssr51813	transcription start site region 51813	443 bp upstream
Tssr51814	transcription start site region 51814	520 bp downstream
Tssr51815	transcription start site region 51815	554 bp downstream
Tssr51816	transcription start site region 51816	588 bp downstream