rs229754422 SNP Detail

Summary

• ID
  rs229754422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148374030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGTTATGA AATGCTCCTG GCAGGAAGGA TCCAAGAAAG
  GGGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  R
  TATGAATAGA TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA
  GATAGATACT AAGACCTAGA ATGGCGGGTG TGTATATTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321418891	CHEV_4_147663682	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229754422					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148374030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	791 bp distal
Disp3	dispatched RND transporter family member 3	1608 bp upstream
Gm68159	predicted gene, 68159	649 bp downstream
Rr604639	regulatory region 604639	1619 bp distal
Rr604640	regulatory region 604640	1296 bp distal
Rr604641	regulatory region 604641	1398 bp distal
Rr604642	regulatory region 604642	739 bp distal
Rr604643	regulatory region 604643	1255 bp distal
Rr604644	regulatory region 604644	1120 bp distal
Rr604645	regulatory region 604645	975 bp distal
Rr604646	regulatory region 604646	1545 bp proximal
Tssr44603	transcription start site region 44603	1619 bp upstream