rs229762490 SNP Detail

Summary

• ID
  rs229762490
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64696361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAATGTT CAGTTCCAGG
  GGACCCAATG CCTTCTCCTG CCCTCTTCAA GCTGCTCCAT GCACTCATTA CACAAGAATT
  CACACAAGTG GATGTGCACA CACACACACA CACACACACA CACACACACA CACGAAAATA
  AGCAATTTCT AATTGGCTAA CCACTGAACA TTCTCTCCGA GTCCCTAGGA TTTTTTTTTT
  W
  AATTTAATCT TCTTGATTGT TGCTAGTGGG AGGTACAGTA TGAATTTCCA GCCTGCCATA
  TGCCAGGAAC AGAACTCTCA AAACTCAACT TGACATATAT GACAATATAT AGAAATGTAA
  GTTTATAAAT AAATACATGT AAATTATAAA TCTGATGTCC TATCCTGTTT GAATGATAAT
  TACATTTTTC TTTCTGCTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322985857	CHEV_9_64636886	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229762490					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64696361 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	352 bp upstream
Rr681316	regulatory region 681316	46 bp proximal
Rr681317	regulatory region 681317	1616 bp proximal
Tssr2909	transcription start site region 2909	1715 bp downstream
Tssr85622	transcription start site region 85622	570 bp upstream
Tssr85623	transcription start site region 85623	584 bp upstream
Tssr85624	transcription start site region 85624	1877 bp upstream
Tssr90157	transcription start site region 90157	1743 bp downstream