rs229768454 SNP Detail

Summary

• ID
  rs229768454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44147974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG TCTCTCTCCA AAAATGAGGT
  R
  GGAGAATGAT AGGAGAAGGA AGACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322199055	CHEV_7_51753920	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229768454					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44147974 () rs orientation: forward

Symbol	Name	Function Class
4921540A03Rik	RIKEN cDNA 4921540A03 gene	827 bp upstream
Cpgi18969	CpG island 18969	1396 bp distal
Cpgi18970	CpG island 18970	1489 bp proximal
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Rr380742	regulatory region 380742	475 bp downstream
Rr646108	regulatory region 646108	1882 bp distal
Rr646109	regulatory region 646109	1616 bp distal
Rr646110	regulatory region 646110	1568 bp distal
Tssr66386	transcription start site region 66386	1963 bp downstream
Tssr66387	transcription start site region 66387	1950 bp downstream
Tssr66388	transcription start site region 66388	1873 bp downstream
Tssr66389	transcription start site region 66389	1846 bp downstream
Tssr66390	transcription start site region 66390	1840 bp downstream
Tssr66391	transcription start site region 66391	1297 bp downstream