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rs229780178 SNP Detail
Summary
  • ID
    rs229780178
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr4:133856284 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCGCGAGTC ACTGCTCTCG
    GGACCAATGA GCTGCGCAGG CGGGTAAGGC GGGGCCTGCA TGACCCCGCC CTGCTCCGTG
    GCCTGGAGCC GGGAGGACCC CTGTCCTCTG CAGCTACTTG GCTCCCCCAC TTCCCCCTCA
    GCCCCATGCT GGGGACCGGC TAAAAGGCAG AAAAAGCTGG GAAGGCAGGC GGACCGGTTC
    W
    GTTAAAAGCT TTCCCCAGTC TACCCGGGTT GTGTACATTC AGTGGCCAAA GCAGTGCCAC
    CCAGGTCTCC CGGTCTCTTA ATAGCACAGC TCAGTATGGA ACTTTGGAAG GCGGGTCAGT
    TCGCAAGCTT AGACAGCAAG GGCCGGGGGG AAAGCTGTGG TGGGGCGCTG GAGGGCGGGG
    AGGGCCAGTG CAGCCAGGAC                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss363332277 MGP_WTSI_4_133684888 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229780178 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss363332277 MGP_WTSI_4_133684888 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:133856284 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cep85 centrosomal protein 85 885 bp downstream
Cpgi15028 CpG island 15028 within coordinates
Gm68742 predicted gene, 68742 within coordinates
Rr601575 regulatory region 601575 within coordinates
Rr601576 regulatory region 601576 628 bp proximal
Rr601577 regulatory region 601577 706 bp proximal
Rr601578 regulatory region 601578 854 bp proximal
Sh3bgrl3 SH3 domain binding glutamic acid-rich protein-like 3 240 bp upstream
Tssr39535 transcription start site region 39535 1368 bp downstream
Tssr39536 transcription start site region 39536 1258 bp downstream
Tssr39537 transcription start site region 39537 1007 bp downstream
Tssr43866 transcription start site region 43866 1287 bp upstream
Tssr43867 transcription start site region 43867 1253 bp upstream
Tssr43868 transcription start site region 43868 1182 bp upstream
Tssr43869 transcription start site region 43869 1162 bp upstream
Tssr43870 transcription start site region 43870 1000 bp upstream
Tssr43871 transcription start site region 43871 950 bp upstream
Tssr43872 transcription start site region 43872 923 bp upstream
Tssr43873 transcription start site region 43873 897 bp upstream
Tssr43874 transcription start site region 43874 882 bp upstream
Tssr43875 transcription start site region 43875 273 bp upstream
Tssr43876 transcription start site region 43876 203 bp upstream
Tssr43877 transcription start site region 43877 631 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory